PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000049G1650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 344aa    MW: 37004.4 Da    PI: 7.1432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000049G1650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20171221256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+ge
  PH01000049G1650 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRGE 221
                      59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.07E-32170228No hitNo description
SuperFamilySSF541711.11E-22171228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-32171229IPR001471AP2/ERF domain
SMARTSM003803.1E-38171234IPR001471AP2/ERF domain
PROSITE profilePS5103223.169171228IPR001471AP2/ERF domain
PfamPF008479.0E-14172221IPR001471AP2/ERF domain
PRINTSPR003676.0E-11172183IPR001471AP2/ERF domain
PRINTSPR003676.0E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAAIDMYKY NTSTHQIAAS SSASDQELMK ALEPFIRSAS SSSSSSSSPY HYYPSSMTQD  60
SYMPTPTSYT SLTTPPLPTT TSSPFSQLPP LYSSSQYAPS AASAMTGPIG LTHLGPAQIQ  120
QIQAQLLVQQ QQQQQQQRGL AGAFLGPRAQ PMKQSGSPPR SVAVGAVQSK LYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEDAALA YDKAAFRLRG ELARLNFPSL RRGGVHLAGP  240
LHASVDAKLT AICQSLAEPS SKNAAATAAE SAASAAEPES PKCSASTEGE ESVSAGSPPP  300
PTLLAPPVPE MEKLDFTEAP WDESETFQLR KYPSWDIDWD SILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-21168228263ATERF1
2gcc_A1e-21168228263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1007240.0FP100724.1 Phyllostachys edulis cDNA clone: bphyem201a17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.11e-152putative AP2/EREBP transcription factor superfamily protein
TrEMBLA7XA611e-156A7XA61_WHEAT; DRF-like transcription factor DRFL2a
STRINGGRMZM2G029323_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-46related to AP2 4